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We measure the mean free path ($\lambda _{\rm mfp,H\, \small {I}}$), photoionization rate ($\langle \Gamma _{\rm H\, \small {I}} \rangle$), and neutral fraction ($\langle f_{\rm H\, \small {I}} \rangle$) of hydrogen in 12 redshift bins at 4.85 < z < 6.05 from a large sample of moderate resolution XShooter and ESI QSO absorption spectra. The fluctuations in ionizing radiation field are modelled by post-processing simulations from the Sherwood suite using our new code ‘EXtended reionization based on the Code for Ionization and Temperature Evolution’ (ex-cite). ex-cite uses efficient Octree summation for computing intergalactic medium attenuation and can generate large number of high resolution $\Gamma _{\rm H\, \small {I}}$ fluctuation models. Our simulation with ex-cite shows remarkable agreement with simulations performed with the radiative transfer code Aton and can recover the simulated parameters within 1σ uncertainty. We measure the three parameters by forward-modelling the  Lyα forest and comparing the effective optical depth ($\tau _{\rm eff, H\, \small {I}}$) distribution in simulations and observations. The final uncertainties in our measured parameters account for the uncertainties due to thermal parameters, modelling parameters, observational systematics, and cosmic variance. Our best-fitting parameters show significant evolution with redshift such that $\lambda _{\rm mfp,H\, \small {I}}$ and $\langle f_{\rm H\, \small {I}} \rangle$ decreases and increases by a factor ∼6 and ∼104, respectively from z ∼ 5 to z ∼ 6. By comparing our $\lambda _{\rm mfp,H\, \small {I}}$, $\langle \Gamma _{\rm H\, \small {I}} \rangle$ and $\langle f_{\rm H\, \small {I}} \rangle$ evolution with that in state-of-the-art Aton radiative transfer simulations and the Thesan and CoDa-III simulations, we find that our best-fitting parameter evolution is consistent with a model in which reionization completes by z ∼ 5.2. Our best-fitting model that matches the $\tau _{\rm eff, H\, \small {I}}$ distribution also reproduces the dark gap length distribution and transmission spike height distribution suggesting robustness and accuracy of our measured parameters.

 

We present the Sherwood–Relics simulations, a new suite of large cosmological hydrodynamical simulations aimed at modelling the intergalactic medium (IGM) during and after the cosmic reionization of hydrogen. The suite consists of over 200 simulations that cover a wide range of astrophysical and cosmological parameters. It also includes simulations that use a new lightweight hybrid scheme for treating radiative transfer effects. This scheme follows the spatial variations in the ionizing radiation field, as well as the associated fluctuations in IGM temperature and pressure smoothing. It is computationally much cheaper than full radiation hydrodynamics simulations, and circumvents the difficult task of calibrating a galaxy formation model to observational constraints on cosmic reionization. Using this hybrid technique, we study the spatial fluctuations in IGM properties that are seeded by patchy cosmic reionization. We investigate the relevant physical processes and assess their impact on the z > 4 Lyman-α forest. Our main findings are: (i) consistent with previous studies patchy reionization causes large-scale temperature fluctuations that persist well after the end of reionization, (ii) these increase the Lyman-α forest flux power spectrum on large scales, and (iii) result in a spatially varying pressure smoothing that correlates well with the local reionization redshift. (iv) Structures evaporated or puffed up by photoheating cause notable features in the Lyman-α forest, such as flat-bottom or double-dip absorption profiles.

 

ABSTRACT We compare a sample of five high-resolution, high S/N  Ly α forest spectra of bright 6 < z < ∼6.5 QSOs aimed at spectrally resolving the last remaining transmission spikes at z > 5 with those obtained from mock absorption spectra from the Sherwoodand Sherwood–Relics simulation suites of hydrodynamical simulations of the intergalactic medium (IGM). We use a profile-fitting procedure for the inverted transmitted flux, 1 − F, similar to the widely used Voigt profile fitting of the transmitted flux F at lower redshifts, to characterize the transmission spikes that probe predominately underdense regions of the IGM. We are able to reproduce the width and height distributions of the transmission spikes, both with optically thin simulations of the post-reionization Universe using a homogeneous UV background and full radiative transfer simulations of a late reionization model. We find that the width of the fitted components of the simulated transmission spikes is very sensitive to the instantaneous temperature of the reionized IGM. The internal structures of the spikes are more prominent in low temperature models of the IGM. The width distribution of the observed transmission spikes, which require high spectral resolution (≤ 8  km s−1) to be resolved, is reproduced for optically thin simulations with a temperature at mean density of T0 = (11 000 ± 1600, 10 500 ± 2100, 12 000 ± 2200) K at z = (5.4, 5.6, 5.8). This is weakly dependent on the slope of the temperature-density relation, which is favoured to be moderately steeper than isothermal. In the inhomogeneous, late reionization, full radiative transfer simulations where islands of neutral hydrogen persist to z ∼ 5.3, the width distribution of the observed transmission spikes is consistent with the range of T0 caused by spatial fluctuations in the temperature–density relation.